Every morning at 7:45 AM the entire school body comes together in the gym for Morning Prayer. Teachers take turns leading the Morning Prayer and reading out loud the Daily Bible Reading. Students are invited to share any special intentions. Finally, all who are present say the Lord's Prayer, a Hail Mary, and the Pledge of Allegiance. Before being dismissed all students recite the Creed:
"¡Sí se puede! I am a student at San Juan Diego Academy. I am faithful, respectful, responsible, and dependable. I will succeed in school, I will graduate high school, and I will go to college!"